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Product Line: Pharmaceutical Chemicals

N2-(1S-Ethoxycarbonyl-3-phenylpropyl)-N6-trifluoroacetyl-L-lysine

CAS 116169-90-5

Molecular structure of N2-(1S-Ethoxycarbonyl-3-phenylpropyl)-N6-trifluoroacetyl-L-lysine

CAS · 116169-90-5

01

Product Overview

N2-(1S-Ethoxycarbonyl-3-phenylpropyl)-N6-trifluoroacetyl-L-lysine is a high-purity pharmaceutical-intermediates supplied for industrial and specialty chemical applications. Contact our team for specifications, packaging options and lead times.

02

Product Specifications

Description: White or almost white powder
Assay (On dried basis): 98.5%~102.0%
Solubility: Sparingly soluble in methanol and chloroform
Identification: IR spectrum accordance with LA2 reference spectrum
Specific rotation: +6 to +9°
Loss on drying: 1% max
Related substances Any individual unspecified impurity: 1% max
Total impurities: 2% max
R,R-LA2: 0.1% max
03

Applications

 

 

1. HIV Protease Inhibitor Intermediate

This compound is best known as a key synthetic intermediate in the preparation of HIV-1 protease inhibitors, particularly in the development of:

Indinavir (Crixivan®) - a widely studied and FDA-approved antiretroviral drug used in HAART (Highly Active Antiretroviral Therapy).

The molecule mimics peptide substrate residues and contributes to the transition-state isostere in protease inhibitors.

2. Peptidomimetic Drug Design

The modified lysine backbone provides stability against enzymatic degradation, making it a valuable scaffold in the synthesis of peptidomimetics.

Commonly used in the design of enzyme inhibitors, especially those targeting aspartyl or serine proteases.

3. Medicinal Chemistry Research

Used as a tool compound or intermediate in:

Structure–Activity Relationship (SAR) studies

Development of bioisosteres that mimic natural amino acids

Designing transition-state analogs for enzyme inhibition

4. Custom Peptide and Modified Protein Synthesis

This modified lysine derivative can be incorporated into custom peptides for studying:

Enzyme–substrate interactions

Protease selectivity

Non-natural amino acid incorporation

04

Benefits

 

 

1. Transition-State Mimicry

The structure closely mimics the tetrahedral transition state of peptide bond hydrolysis, enabling strong binding affinity to protease active sites.

This contributes directly to the potency of HIV protease inhibitors.

2. Enhanced Protease Resistance

The N² and N⁶ modifications render the molecule resistant to peptidases and proteases, improving metabolic stability in vivo.

Important for oral bioavailability and longer drug half-life.

3. Synthetic Versatility

The molecule contains multiple reactive handles (e.g., ester, amide, trifluoroacetamide) that can be selectively modified or deprotected depending on the synthetic pathway.

Easily incorporated into multi-step synthesis protocols.

4. Stereospecificity

With a defined (1S) configuration, it contributes to stereoselective binding in biological systems-important for drug efficacy and safety.

05

Conclusion

N²-(1S-Ethoxycarbonyl-3-phenylpropyl)-N⁶-trifluoroacetyl-L-lysine (CAS 116169-90-5) is a specialized L-lysine derivative used primarily as an intermediate in the synthesis of HIV protease inhibitors such as indinavir. Its well-designed structure mimics enzyme substrates and transition states, making it a powerful component in drug discovery and peptidomimetic research. Its dual-protected amine groups provide synthetic flexibility and resistance to enzymatic degradation, supporting its use in the creation of stable and potent therapeutic agents.

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